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Back to Controlling Biology - Fabian Theis, Helmholtz Munich, with Fabian Theis & RJ Honicky.

What Is an Organoid?

Fabian Theis says an organoid is a little piece of an organ grown in a dish. Cells taken out of a body can grow into small multicellular systems that connect and do things. He is not a trained biologist, and the first time he saw cells do that he was impressed.

People can put cells in a dish and grow mini brains, a set of neurons that start connecting and talking to each other. Those mini brains have been shown to compute. Heart cells can grow into little heart organoids that start beating, and collaborators of his have beating heart-cell clumps in a dish. The colon is a simpler system that works very well, and cancer systems exist too. When tissue is hard to acquire, as with some neurodegenerative diseases, the path is cells from the skin, turned into stem cells, then into little brains.

An organoid often has no immune system, and feeding it is its own problem. It is still much more than a cell line, which is one cell type.

Transcript

Controlling Biology - Fabian Theis, Helmholtz Munich ·

Latent Space: The AI Engineer Podcast

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  1. What Is a Virtual Cell?Fabian Theis says a virtual cell, in the way people use the phrase, is a model that predicts how a cell would behave under all kinds of perturbations.
  2. What Is a Transcriptome?Fabian Theis calls a transcriptome the messenger RNAs each cell reads off a genome that the Human Genome Project mapped for the body and that stays pretty…
  3. What Is Perturbation Space for a Virtual Cell?Fabian Theis calls perturbation space the input space of everything that happens to a cell.
  4. Why Did Later AlphaFold Models Learn Rotation Symmetry From Data?Fabian Theis says later AlphaFold models found rotation symmetry in the data instead of building that rule into training.
  5. Why Do Linear Baselines Still Matter for Virtual Cell Models?Fabian Theis says linear baselines still matter because a field rushing toward a virtual cell sometimes skipped them.
  6. How Competitive Are Startups in Germany?Fabian Theis leaves a small doubt on the exact ranking and still puts Munich, at least in continental Europe, as the prime place now for VC capital and for…
  7. How Does a Model Choose the Next Biology Experiment?Fabian Theis says a model chooses the next biology experiment by inverting a forward model.

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